Normally, the flipbook exported from InDesign with in5, is responsive to the device layout.
It will show a two-page spread in landscape, and a single-page in portrait orientation.
Because in5 is extendable, you can override this behavior.
If you attach the following code as a .js file in the Resources section of the in5 dialog (how to attach resources):
getOrientation = function(){ return 'portrait'; };
That will force the Flipbook to stay in single page mode.
To do so, instead, only on mobile, you can attach the following code:
var getOrientOrig = getOrientation; getOrientation = function(){ return touchEnabled ? 'portrait' : getOrientOrig; };